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All functions

acc()
acc
bin.mod
Example model for a survival outcome
cfmDataSumm()
Summarising data within a CFM
cfmDataVis()
Visualising data within a CFM
coef(<psc>)
Returns the coefficeint estimate of a psc object.
cont.mod
Example model for a survival outcome
count.mod
Example model for a survival outcome
data
Example Dataset of patients with aHCC receiving Lenvetanib
dataComb()
A generic function for cleaning data ready for analysis
dataComb(<flexsurvreg>)
Function for cleaning the data of a model with class 'flexsurvreg'
dataComb(<glm>)
Function for cleaning the data of a model with class 'flexsurvreg'
dataComb(<pscCFM>)
Function for cleaning the data of a model with class
dataSumm()
A function which provides basic summary information of a matrix x
data_match()
A function to ensure that data from the cfm and data cohort are compatible
e4_data
Example Dataset of patients treated with GemCap in the ESPAC-4 trial
facVis()
Visualising Categorical Data
facVisComp()
Visualising Categorical Data
gemCFM
Model for a survival outcome based on Gemcitbine patients from ESPAC-3
initParm()
Fucntion for estimating initial parameter values 'flexsurvreg'
initParm(<flexsurvreg>)
Fucntion for estimating initial parameter values 'flexsurvreg'
initParm(<glm>)
Fucntion for estimating initial parameter values
initParm(<pscCFM>)
Fucntion for estimating initial parameter values
lik.flexsurvreg()
Likelihood function for a psc model of class 'flexsurvreg'
lik.flexsurvreg.mtc()
Likelihood function for a psc model of class 'flexsurv' with multiple treatment comparisons
lik.glm()
Likelihood function for a psc model of class 'glm'
lik.glm.mtc()
Likelihood function for a psc model of class 'glm' with multiple treatment comparisons
linPred()
Estimates the linear predictor of a psc object
modelExtract()
A generic function for extracting model information
modelExtract(<flexsurvreg>)
A generic function for extracting model information
modelExtract(<glm>)
A generic function for extracting model information
modp()
modp
numVis()
Visualising Categorical Data
numVisComp()
Visualising Categorical Data
plot(<psc>)
Function for Plotting PSC objects
plot(<psc.binary>)
Function for Plotting PSC objects
plot(<psc.cont>)
Function for Plotting PSC objects
plot(<psc.count>)
Function for Plotting PSC objects #' A function which illsutrates the predicted response under the counter factual model and the observed response under the experimental treatment(s).
plot(<psc.flexsurvreg>)
Function for Plotting PSC objects
print(<psc>)
Personalised Synthetic Controls - print
print(<quiet_gglist>)
quiet_gglist
print(<quiet_gtsumm>)
quiet_gtsumm
print(<quiet_list>)
quiet_gtsumm
psc.object
Fitted psc object
pscCFM()
Creating a CFM model which can be shared
pscEst()
Function for performing estimation procedures in 'pscfit'
pscEst(<flexsurvreg>)
Function for estimating initial parameter values 'flexsurvreg'
pscEst(<glm>)
Function for estimating initial parameter values 'flexsurvreg'
pscEst(<pscCFM>)
Function for estimating initial parameter values 'flexsurvreg'
pscSumm()
Personalised Synthetic Controls - summary
pscfit()
Personalised Synthetic Controls model fit
summary(<psc>)
Personalised Synthetic Controls - summary
surv.mod
Example model for a survival outcome
surv_fpm()
A function to obtain survival estimates from a flexible parametric model
visComp()
Visualising Comparisons between a CFM and a DC